usefragsph not on
There are 30 ligand heavy atoms
Ligand center of coords (x y z): 43.3549 31.6077 30.8649666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1626
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 841
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 839
Number of spheres polar: 204, nonpolar: 463, out of current total: 839
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.41945 52.98310 21.62800 41.54506 20.89967 40.79900
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 462
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 412
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 362
Spheres center of coords (x y z): 45.3741364917127 30.4618427624309 29.7713646961326
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.58003069227475
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 30