usefragsph not on
There are 26 ligand heavy atoms
Ligand center of coords (x y z): 42.4612307692308 31.1257692307692 32.515
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1615
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 699
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 699
Number of spheres polar: 175, nonpolar: 449, out of current total: 699
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.47224 52.40889 21.13534 41.10573 22.51868 42.44375
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 242
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 154
Spheres center of coords (x y z): 45.044471948052 29.6539779220779 31.5051601948052
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.32321800700547
Final number of output spheres is: 45
Number of polar spheres: 18
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 26