usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): -2.53591666666667 36.9380833333333 19.394
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1612
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 644
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 644
Number of spheres polar: 191, nonpolar: 366, out of current total: 644
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.45315 7.36454 26.98182 46.89197 9.41301 29.21565
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 238
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 193
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 135
Spheres center of coords (x y z): -1.53788562962963 35.9366027407408 16.501430962963
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.86889599461233
Final number of output spheres is: 45
Number of polar spheres: 17
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 24