usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -8.62668 37.91252 40.53072
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1440
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 671
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 669
Number of spheres polar: 170, nonpolar: 382, out of current total: 669
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -18.59230 1.20356 27.92961 47.90000 30.68989 50.52323
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 363
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 313
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 266
Spheres center of coords (x y z): -11.3425230075188 37.4123990977444 41.951627443609
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.09481377182495
Final number of output spheres is: 60
Number of polar spheres: 5
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 25