usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 22.05615625 11.065875 29.4199375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1494 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 708 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 707 Number of spheres polar: 184, nonpolar: 353, out of current total: 707 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.05926 32.04815 1.13958 21.05342 19.79702 39.39835 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 161 Spheres center of coords (x y z): 24.2028068944099 12.2661025465839 30.519082173913 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.78079523197017 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 32