usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 44.2448214285714 32.7163214285714 30.7242857142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1496
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 868
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 863
Number of spheres polar: 198, nonpolar: 449, out of current total: 863
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.38222 54.23739 22.79933 42.66516 20.74525 40.63974
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 300
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 217
Spheres center of coords (x y z): 46.424967281106 32.16186359447 29.1983047004608
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.43430817098078
Final number of output spheres is: 45
Number of polar spheres: 7
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 28