usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 43.93375 53.7106666666667 92.8924583333334 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1431 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 854 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 854 Number of spheres polar: 242, nonpolar: 481, out of current total: 854 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.07689 53.91480 43.71693 63.70325 82.92717 102.88792 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 45.6067115178571 52.8437466964286 92.9828087946429 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.58634953405483 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 24