usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 44.03108 53.3838 92.92992
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1471
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969
Number of spheres polar: 299, nonpolar: 540, out of current total: 969
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.19178 54.02406 43.39241 63.37484 83.24288 102.89194
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 296
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 233
Spheres center of coords (x y z): 45.3625607725322 52.8527143776824 92.7439891845494
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.88006366029051
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 0
Final number of spheres that are from crystallographic ligand: 25