usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 21.6183571428571 10.3082857142857 31.1040714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1435 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 862 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 862 Number of spheres polar: 239, nonpolar: 404, out of current total: 862 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.74002 31.61167 0.31230 20.27190 21.16011 41.09795 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 482 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 346 Spheres center of coords (x y z): 23.8170630346821 10.243580549133 31.2983108959538 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.76051006797555 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 28