usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 21.6466551724138 8.86475862068966 31.1396206896552 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1371 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 786 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 786 Number of spheres polar: 165, nonpolar: 386, out of current total: 786 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.72880 31.64022 -1.06778 18.84026 21.23364 41.12414 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 479 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 372 Spheres center of coords (x y z): 22.6304873924731 9.39145440860216 31.1350449731183 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29683090375457 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 29