usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 19.5490526315789 11.5115789473684 31.8593157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1454 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 897 Number of spheres polar: 280, nonpolar: 443, out of current total: 897 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.93776 29.45130 1.54173 21.50773 21.91587 41.73739 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 473 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 319 Spheres center of coords (x y z): 21.2334488401254 14.9011189655172 31.4801526332288 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.38310211217932 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 19