usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 21.6769 10.6620666666667 31.3085333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1461 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 722 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 721 Number of spheres polar: 202, nonpolar: 340, out of current total: 721 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.75100 31.59223 0.66723 20.58520 21.33039 41.27749 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 274 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): 23.1587556923077 10.2020031794872 30.5015861538462 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.18118938654613 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30