usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 21.2828076923077 10.5789230769231 31.8270769230769 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 736 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 731 Number of spheres polar: 160, nonpolar: 379, out of current total: 731 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.37408 31.27800 0.58753 20.57441 21.95168 41.78716 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 196 Spheres center of coords (x y z): 22.0677444897959 10.2313313265306 30.9007541326531 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.47371924334559 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 26