usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 22.0203846153846 10.2885384615385 31.9418846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1569 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 743 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 742 Number of spheres polar: 189, nonpolar: 364, out of current total: 742 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.24061 32.01082 0.34052 20.28648 22.00925 41.94188 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 387 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 329 Spheres center of coords (x y z): 23.239832887538 11.3522976899696 31.1565786018237 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.72848820979083 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 26