usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 21.7062222222222 13.3394722222222 31.9651388888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1590 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 888 Number of spheres polar: 183, nonpolar: 463, out of current total: 888 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.71333 31.69585 3.38605 23.31552 21.97331 41.86994 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 290 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 23.6565366367713 15.8240178026906 31.9935900896861 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32249028244574 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 36