usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 22.4906666666667 0.310518518518519 -19.1532592592593 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1403 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1004 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1004 Number of spheres polar: 335, nonpolar: 542, out of current total: 1004 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.53640 32.46539 -9.62733 10.25434 -29.08300 -9.23391 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 445 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 381 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 20.8641781176471 0.902462941176471 -18.4424872941176 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.61756661139411 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27