usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -19.1396875 -3.42434375 19.62853125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2144 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1098 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1092 Number of spheres polar: 371, nonpolar: 610, out of current total: 1092 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -29.09612 -9.18517 -13.42198 6.47077 9.64408 29.56917 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 257 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): -19.033751622807 -1.30623855263158 16.0953724561404 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.4393479924964 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 32