usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 14.6793684210526 -3.51744736842105 0.524157894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2249 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1006 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1006 Number of spheres polar: 282, nonpolar: 560, out of current total: 1006 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.72511 24.58143 -13.49470 6.45784 -9.45218 10.51006 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 235 Spheres center of coords (x y z): 17.0141612765957 -3.18767659574468 -2.75743995744681 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.7686157195126 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 38