usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -0.204526315789474 -0.630605263157895 -14.4096315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2477 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1163 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1163 Number of spheres polar: 373, nonpolar: 601, out of current total: 1163 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.84048 9.71517 -10.61941 9.32175 -24.39251 -4.54405 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 261 Spheres center of coords (x y z): 0.589104636015326 -4.42735731800767 -15.9606692720307 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23047080175372 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 38