usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 2.02093939393939 32.2260606060606 30.2734848484848 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1442 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 731 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 210, nonpolar: 325, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.97549 11.80452 22.26029 42.22367 21.00625 40.06973 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): -1.0223673255814 30.5707324418605 31.5769248837209 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01246444478993 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33