usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 33.2019318181818 38.3554318181818 15.3969545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2519 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1213 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1207 Number of spheres polar: 271, nonpolar: 781, out of current total: 1207 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.78461 43.03233 28.41795 48.35516 5.41911 25.39000 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 604 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 510 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 504 Spheres center of coords (x y z): 33.1919588888889 36.8684356349207 15.8587957936508 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87057125172619 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 44