usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 16.8847297297297 -3.55121621621622 -19.5521351351351 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2102 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1003 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1003 Number of spheres polar: 175, nonpolar: 646, out of current total: 1003 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.23723 26.77772 -13.35241 6.43435 -29.36520 -9.55288 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 314 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): 16.6499404958678 -2.66716896694215 -16.7539776033058 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63496204360032 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 37