usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 35.5103333333333 38.1768333333333 22.6711333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1395 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 896 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 268, nonpolar: 433, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.51434 45.03818 28.22731 48.16735 12.67662 32.41785 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 302 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 177 Spheres center of coords (x y z): 33.3050814124294 34.725876779661 22.9882231638418 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49434823549076 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 30