usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 35.2965652173913 38.3252173913043 22.0550869565217 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1585 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 860 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860 Number of spheres polar: 267, nonpolar: 464, out of current total: 860 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.29891 45.28379 28.33588 48.32389 12.07977 32.04078 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 464 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 316 Spheres center of coords (x y z): 34.3535150949367 39.4327043354431 25.5972925316456 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93981135274386 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 23