usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 20.8010277777778 2.81025 -23.7013055555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1246 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 793 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 793 Number of spheres polar: 193, nonpolar: 421, out of current total: 793 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.97105 30.77467 -7.16400 12.74197 -33.66657 -13.71787 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 473 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 403 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 333 Spheres center of coords (x y z): 19.2855127927928 2.08253603603604 -22.0809793393393 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.66857214194122 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 36