usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -1.46713157894737 -3.35802631578947 -17.2994736842105 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2322 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1157 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1157 Number of spheres polar: 293, nonpolar: 728, out of current total: 1157 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.69065 8.51165 -13.35004 6.61139 -27.26558 -7.31561 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 321 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 259 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): -0.740271393442623 -6.68228643442623 -17.9392087704918 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64198195963098 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38