usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 14.9520263157895 -3.47607894736842 0.743657894736842 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2290 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1072 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1072 Number of spheres polar: 266, nonpolar: 665, out of current total: 1072 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.06963 24.86691 -13.46472 6.50470 -9.23220 10.69652 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 565 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 478 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 447 Spheres center of coords (x y z): 17.0161706487696 -3.08504505592841 -2.43680742729307 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81452495948083 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 38