usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -0.747466666666667 -3.85306666666667 -15.0186333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2289 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1088 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1088 Number of spheres polar: 336, nonpolar: 597, out of current total: 1088 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.19875 8.97018 -13.83161 5.98600 -25.01704 -5.05008 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 326 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): -0.01093992248062 -6.74751100775194 -15.987729379845 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35101257257473 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30