usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 2.08883870967742 31.7007419354839 30.134935483871
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1788
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 765
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764
Number of spheres polar: 200, nonpolar: 430, out of current total: 764
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.84393 12.06510 21.71520 41.64923 20.47040 40.07781
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 410
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 354
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 310
Spheres center of coords (x y z): -0.426682064516129 30.6519753548387 31.739516516129
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.67835388269449
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 31