usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 20.5476086956522 1.1714347826087 -23.1415217391304 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1311 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 802 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 802 Number of spheres polar: 314, nonpolar: 383, out of current total: 802 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.69452 30.38522 -8.81838 11.15241 -33.11794 -13.14423 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 350 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): 20.3721520703125 3.185360546875 -22.734015 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43122820162514 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23