usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 0.891818181818182 2.81781818181818 -15.4600909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1947 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1060 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1060 Number of spheres polar: 307, nonpolar: 641, out of current total: 1060 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.97289 9.57239 -7.13924 12.72066 -25.45743 -5.51492 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 502 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 423 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 416 Spheres center of coords (x y z): -0.327556586538461 5.19235100961539 -15.5661540144231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.59946079323636 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22