usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 1.15461764705882 3.86488235294118 -15.4227352941176 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2015 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1002 Number of spheres polar: 247, nonpolar: 567, out of current total: 1002 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.50225 9.06203 -6.13284 13.81784 -25.41881 -5.45109 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 535 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 483 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 436 Spheres center of coords (x y z): 0.0798676376146796 7.20016729357798 -15.2823955045871 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85655034907971 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 34