usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -2.1902962962963 -4.15033333333333 -19.9360740740741 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1594 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 773 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 771 Number of spheres polar: 242, nonpolar: 378, out of current total: 771 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.13136 6.71779 -14.14514 5.84895 -29.87781 -9.93762 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 194 Spheres center of coords (x y z): -1.89841195876289 -2.55231943298969 -16.5204255154639 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44093548900937 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27