usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -2.0856 -1.77186666666667 34.6031333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1971 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 838 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 838 Number of spheres polar: 277, nonpolar: 427, out of current total: 838 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.88696 7.49261 -11.76903 8.16831 24.80141 44.55111 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 432 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 313 Spheres center of coords (x y z): -0.149948785942492 -0.272901821086262 37.1548253354633 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.1072157219552 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 30