usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 23.753875 16.5240833333333 10.5427083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1353 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 902 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 901 Number of spheres polar: 257, nonpolar: 503, out of current total: 901 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.78642 33.73400 6.81683 26.50555 0.77672 20.37634 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 301 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 21.7088336065574 19.8234287978142 9.34841530054645 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.65670056928317 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 24