usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 5.94141935483871 -37.5811290322581 -23.9646451612903
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1911
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 829
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 829
Number of spheres polar: 215, nonpolar: 498, out of current total: 829
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.01556 15.86275 -47.55509 -29.17354 -33.96021 -14.00594
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 363
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 337
Spheres center of coords (x y z): 5.3355140652819 -36.2694366468843 -23.7265290207715
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.14204090606025
Final number of output spheres is: 60
Number of polar spheres: 29
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 31