usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 35.6688666666667 -1.98466666666667 22.4513666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1810 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 978 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 978 Number of spheres polar: 322, nonpolar: 483, out of current total: 978 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.67231 45.58794 -11.96541 8.01325 12.45335 32.40077 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 297 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 212 Spheres center of coords (x y z): 33.8997171226415 1.19241938679245 20.2205621226415 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07095784426226 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 30