usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): -2.795175 -0.7886 24.303725
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1413
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 869
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869
Number of spheres polar: 288, nonpolar: 405, out of current total: 869
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.78185 6.73323 -10.78747 9.19221 14.31490 34.29528
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 293
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 246
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 234
Spheres center of coords (x y z): -2.66719542735042 -0.23261076923077 26.0694691880342
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.24260610454317
Final number of output spheres is: 45
Number of polar spheres: 6
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 40