usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): -2.795175 -0.7886 24.303725
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1413
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 869
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 869
Number of spheres polar: 288, nonpolar: 405, out of current total: 869
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.78185 6.73323 -10.78747 9.19221 14.31490 34.29528
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 465
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 409
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 393
Spheres center of coords (x y z): -2.71216524173028 -0.154552188295165 25.7142402290077
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.23936853095942
Final number of output spheres is: 60
Number of polar spheres: 8
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 40