There are 40 ligand heavy atoms Ligand center of coords (x y z): -2.795175 -0.7886 24.303725 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 13638 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9458 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9458 Number of spheres polar: 5505, nonpolar: 3000, out of current total: 9458 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.77780 9.20080 -12.78680 11.21000 12.30460 36.01400 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 702 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 698 Spheres center of coords (x y z): -2.18122492836676 -1.29436418338109 26.3665209169055 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.56679252410653 Final number of output spheres is: 120 Number of polar spheres: 46 Number of nonpolar spheres: 68 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 40