DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-2-09.c.bkslab.org 10-Apr-12 19:32:31 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1750060 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -22.82000 -16.33000 -1.598999 grid max 19.18000 17.67000 39.40100 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 17.93557 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 LGF_361_2 1891 888254 40 18270 327.8 2.31 E LGF_361_2 3 -8.39 -38.00 11.69 -0.64 -35.33 2 LGF_361_2 2348 2188903 40 1800 1432.2 6.57 E LGF_361_2 3 -10.28 -26.60 3.94 -0.34 -33.29 3 LGF_361_2 4936 1647018 40 7791 458.7 4.27 E LGF_361_2 3 -9.66 -29.57 7.00 -0.55 -32.78 4 LGF_361_2 4628 3233246 40 1800 1822.0 8.88 E LGF_361_2 2 -14.56 -25.37 11.27 -0.50 -29.16 5 LGF_361_2 1891 1002127 40 18540 649.0 2.31 E LGF_361_2 3 -9.08 -26.67 5.14 -0.78 -31.39 6 LGF_361_2 2351 2542070 40 1800 1613.3 6.67 E LGF_361_2 3 -11.22 -27.00 5.98 -0.31 -32.54 7 LGF_361_2 4199 1366857 40 5460 1090.0 3.65 E LGF_361_2 3 -8.74 -29.88 6.48 -0.91 -33.04 8 LGF_361_2 4638 2843484 40 1800 1897.6 7.63 E LGF_361_2 2 -10.44 -30.20 13.67 -1.90 -28.87 9 LGF_361_2 1891 883629 40 21018 279.8 2.24 E LGF_361_2 3 -8.79 -36.88 11.48 -0.56 -34.75 10 LGF_361_2 2732 2420924 40 1800 1200.0 7.10 E LGF_361_2 3 -10.62 -28.27 6.00 -0.67 -33.56 11 LGF_361_2 4941 1693054 40 8064 557.3 4.69 E LGF_361_2 3 -10.35 -27.11 6.48 -0.62 -31.60 12 LGF_361_2 4669 3289887 40 1800 1862.9 8.98 E LGF_361_2 2 -0.52 -42.19 17.45 -3.72 -28.98 13 LGF_361_2 1891 1032367 40 22491 782.3 2.46 E LGF_361_2 3 -8.88 -25.68 4.27 -0.20 -30.49 14 LGF_361_2 2734 2712952 40 1800 1501.6 7.13 E LGF_361_2 3 -10.66 -27.77 5.81 -0.42 -33.04 15 LGF_361_2 4199 1387697 40 7917 1132.0 3.61 E LGF_361_2 3 -10.86 -27.95 5.48 -0.95 -34.28 16 LGF_361_2 4638 3053189 40 1800 2758.1 8.79 E LGF_361_2 2 -0.90 -40.49 17.62 -3.71 -27.48 17 LGF_361_2 1891 905971 40 19080 281.1 2.43 E LGF_361_2 3 -7.61 -36.38 6.89 -0.52 -37.62 18 LGF_361_2 2348 2245930 40 1800 2655.9 6.69 E LGF_361_2 3 -9.37 -30.43 5.43 -0.72 -35.09 19 LGF_361_2 5081 1759415 40 7728 296.0 4.75 E LGF_361_2 3 -8.34 -38.09 7.69 -3.44 -42.18 20 LGF_361_2 4638 3132426 40 1800 2676.0 8.39 E LGF_361_2 2 -8.49 -38.27 7.67 -3.41 -42.50 21 LGF_361_2 1891 1037130 40 18720 678.7 2.41 E LGF_361_2 3 -6.76 -40.91 7.68 -3.48 -43.47 22 LGF_361_2 2348 2614043 40 1800 2478.0 6.89 E LGF_361_2 3 -10.73 -32.34 6.86 0.11 -36.10 23 LGF_361_2 5277 1758655 40 6660 540.0 4.64 E LGF_361_2 3 -6.41 -40.04 7.79 -3.27 -41.92 24 LGF_361_2 4683 2848028 40 1800 608.4 7.71 E LGF_361_2 2 -6.46 -38.48 7.95 -3.59 -40.58 25 LGF_361_2 1891 896171 40 21576 268.0 2.23 E LGF_361_2 3 -8.21 -37.32 6.88 -0.57 -39.22 26 LGF_361_2 2732 2771939 40 1800 1681.6 7.08 E LGF_361_2 3 -10.81 -27.26 4.00 -0.64 -34.72 27 LGF_361_2 5108 1812737 40 8106 754.0 4.66 E LGF_361_2 3 -7.30 -45.26 7.93 -3.67 -48.30 28 LGF_361_2 4641 3256689 40 1800 1882.0 8.88 E LGF_361_2 2 -7.44 -42.23 7.88 -3.53 -45.32 29 LGF_361_2 1891 1047576 40 23232 540.0 2.40 E LGF_361_2 3 -7.04 -40.73 7.62 -3.47 -43.62 30 LGF_361_2 2732 2807773 40 1800 1178.0 7.00 E LGF_361_2 3 -9.32 -30.85 5.24 -0.46 -35.40 31 LGF_361_2 5277 1809971 40 8043 556.0 4.74 E LGF_361_2 3 -6.39 -39.58 7.77 -3.20 -41.40 32 LGF_361_2 4683 3040829 40 1800 2769.7 8.19 E LGF_361_2 2 -7.19 -41.06 7.79 -3.53 -43.99 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 3455953 for debugging, time = 178.9700 solvation corrected scores: (a) 1 LGF_361_2 score: -48.297 nathvy = 40 nconfs = 8106 2 LGF_361_2 score: -45.319 nathvy = 40 nconfs = 1800 3 LGF_361_2 score: -43.995 nathvy = 40 nconfs = 1800 4 LGF_361_2 score: -43.617 nathvy = 40 nconfs = 23232 5 LGF_361_2 score: -43.472 nathvy = 40 nconfs = 18720 6 LGF_361_2 score: -42.496 nathvy = 40 nconfs = 1800 7 LGF_361_2 score: -42.177 nathvy = 40 nconfs = 7728 8 LGF_361_2 score: -41.924 nathvy = 40 nconfs = 6660 9 LGF_361_2 score: -41.403 nathvy = 40 nconfs = 8043 10 LGF_361_2 score: -40.581 nathvy = 40 nconfs = 1800 11 LGF_361_2 score: -39.220 nathvy = 40 nconfs = 21576 12 LGF_361_2 score: -37.620 nathvy = 40 nconfs = 19080 13 LGF_361_2 score: -36.098 nathvy = 40 nconfs = 1800 14 LGF_361_2 score: -35.397 nathvy = 40 nconfs = 1800 15 LGF_361_2 score: -35.331 nathvy = 40 nconfs = 18270 16 LGF_361_2 score: -35.091 nathvy = 40 nconfs = 1800 17 LGF_361_2 score: -34.749 nathvy = 40 nconfs = 21018 18 LGF_361_2 score: -34.715 nathvy = 40 nconfs = 1800 19 LGF_361_2 score: -34.281 nathvy = 40 nconfs = 7917 20 LGF_361_2 score: -33.559 nathvy = 40 nconfs = 1800 21 LGF_361_2 score: -33.286 nathvy = 40 nconfs = 1800 22 LGF_361_2 score: -33.043 nathvy = 40 nconfs = 5460 23 LGF_361_2 score: -33.041 nathvy = 40 nconfs = 1800 24 LGF_361_2 score: -32.780 nathvy = 40 nconfs = 7791 25 LGF_361_2 score: -32.541 nathvy = 40 nconfs = 1800 26 LGF_361_2 score: -31.600 nathvy = 40 nconfs = 8064 27 LGF_361_2 score: -31.390 nathvy = 40 nconfs = 18540 28 LGF_361_2 score: -30.491 nathvy = 40 nconfs = 22491 29 LGF_361_2 score: -29.158 nathvy = 40 nconfs = 1800 30 LGF_361_2 score: -28.984 nathvy = 40 nconfs = 1800 31 LGF_361_2 score: -28.873 nathvy = 40 nconfs = 1800 32 LGF_361_2 score: -27.476 nathvy = 40 nconfs = 1800 Date and Time: 10-Apr-12 19:35:42 elapsed time (sec): 179.0200