usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -11.3007142857143 26.6139642857143 47.0349285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1425 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 799 Number of spheres polar: 252, nonpolar: 440, out of current total: 799 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.25565 -1.30390 16.62737 36.36573 37.03916 57.02987 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 432 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 383 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 365 Spheres center of coords (x y z): -12.0909112876712 26.3939278630137 46.7690860821918 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.73934192516321 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28