usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -11.3223666666667 26.3734333333333 47.1572 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1478 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 848 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 848 Number of spheres polar: 258, nonpolar: 481, out of current total: 848 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.30016 -1.41539 16.43813 36.24053 37.17169 57.14383 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 456 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 398 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 380 Spheres center of coords (x y z): -12.1001971842105 26.0795844736842 46.7599700263158 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.79697641286515 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 30