usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -11.3967307692308 26.674 46.9193461538461 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1255 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 823 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 823 Number of spheres polar: 304, nonpolar: 438, out of current total: 823 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.33376 -1.41530 16.73631 36.61743 37.02177 56.88227 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 428 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 373 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 346 Spheres center of coords (x y z): -12.3167324566474 26.6002348843931 46.9919860982659 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.91066121164249 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 26