usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -2.74770588235294 26.2190588235294 55.6349411764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1300 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 648 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 646 Number of spheres polar: 140, nonpolar: 301, out of current total: 646 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.46044 7.22520 17.12980 36.19828 45.64820 65.61253 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 356 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 319 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 301 Spheres center of coords (x y z): -2.36086970099668 28.2929902325581 56.3625533222591 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.5423882736897 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 34