usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -7.95310810810811 28.5625945945946 51.4913243243243 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1000 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 686 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 680 Number of spheres polar: 174, nonpolar: 339, out of current total: 680 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.86186 1.92742 20.88979 38.03886 41.50100 61.34909 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 188 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 169 Spheres center of coords (x y z): -6.8821674556213 29.7914785207101 52.5629129585799 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.93483268693616 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 37