usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 75.0309714285714 88.2731714285714 47.5548571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1327 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 741 Number of spheres polar: 165, nonpolar: 374, out of current total: 741 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.32470 84.86668 78.27937 98.16731 37.88790 57.21543 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 75.6655130516432 86.5160174647888 46.828766713615 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.63436149627321 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 35