usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -5.67078571428571 27.6057857142857 53.7884642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 890 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 544 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 539 Number of spheres polar: 150, nonpolar: 273, out of current total: 539 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.60906 4.31762 20.12383 37.32188 43.80107 63.69359 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 165 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): -5.11087076923077 28.8571367948718 54.3074242948718 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.51176023639668 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 28