usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -5.32857142857143 27.3478214285714 54.5344285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 932 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 613 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 608 Number of spheres polar: 123, nonpolar: 302, out of current total: 608 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.03076 4.64096 20.74984 37.15496 44.54943 64.42600 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 346 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 283 Spheres center of coords (x y z): -3.95084544169612 28.2695413074205 55.9966671378092 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.01671901611479 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28