There are 28 ligand heavy atoms
Ligand center of coords (x y z): -5.32857142857143 27.3478214285714 54.5344285714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 11181
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7207
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7207
Number of spheres polar: 3159, nonpolar: 3353, out of current total: 7207
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.32840 6.67020 15.35180 39.32540 42.53620 66.53160
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1025
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 615
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 588
Spheres center of coords (x y z): -5.16193095238096 31.6437795918367 54.8591571428571
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 9.35096273720189
Final number of output spheres is: 120
Number of polar spheres: 63
Number of nonpolar spheres: 49
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 28